An agent can cause damage before the model makes its first decision.
On September 1, 2026, Manifold described coding agents that invoked Git while gathering workspace context, allowing repository-local Git configuration to run a program on the host. Some affected agents performed that work before a user typed a prompt or approved workspace trust.
In Manifold's GitSpawn research, the relevant path was a repository received as files, with a .git directory inside a ZIP archive. Git read repository-local configuration while the agent gathered context. An ordinary Git clone, fetch, or pull does not transfer repository-local .git/config from the remote.
The model did not choose a harmful tool call. The runtime acted while preparing to use the model. That is why an agent review needs three boundaries: the runtime that starts processes, the gateway that holds credentials and routes requests, and the tool that makes a sensitive change.